Book Chapters
Udhaykumar, Joshitha, Yadalam, Pradeep Kumar, Ayyachamy, Swarnambiga and Anegundi, Raghavendra Vamsi (2025). Prediction and Detection of Pneumothorax on X-Rays Using Neural Network. Navigating Innovations and Challenges in Travel Medicine and Digital Health. (pp. 175-196) Hershey, PA United States: IGI Global. doi: 10.4018/979-8-3693-8774-0.ch009
Ramesh, Reshma, Yadalam, Pradeep Kumar, Ayyachamy, Swarnambiga and Anegundi, Raghavendra Vamsi (2025). Prediction of Postpartum Depression Using Machine Learning. Navigating Innovations and Challenges in Travel Medicine and Digital Health. (pp. 237-258) Hershey, PA United States: IGI Global. doi: 10.4018/979-8-3693-8774-0.ch012
Ayyachamy, Swarnambiga, Manimaran, Mridhula, Yadalam, Pradeep Kumar and Anegundi, Raghavendra Vamsi (2025). Machine learning to predict and detect bacterial pneumonia using chest X-rays: A retrospective diagnostic study. Navigating Innovations and Challenges in Travel Medicine and Digital Health. (pp. 151-172) Hershey, PA United States: IGI Global. doi: 10.4018/979-8-3693-8774-0.ch008
Dhivya, V., Yadalam, Pradeep Kumar, Sri Shivasankari, T., Ayyachamy, Swarnambiga and Anegundi, Raghavendra Vamsi (2025). PSA-based machine learning model in the detection of prostate cancer. Navigating Innovations and Challenges in Travel Medicine and Digital Health. (pp. 217-234) Hershey, PA United States: IGI Global. doi: 10.4018/979-8-3693-8774-0.ch011
Saravanan, Muthupandian, Yadalam, Pradeep Kumar, Anegundi, Raghavendra Vamsi, Ramadoss, Ramya, Krishnamurthi, Indhu and Arumuganainar, Deepavalli (2024). Gold nanoparticles in tissue engineering and regeneration. Gold nanoparticles for drug delivery. (pp. 331-352) edited by Prashant Kesharwani. London, United Kingdom: Academic Press. doi: 10.1016/b978-0-443-19061-2.00011-0
Yadalam, Pradeep Kumar, Krishnamurthi, Indhu, Ramadoss, Ramya, Arumuganainar, Deepvalli, Anegundi, Raghavendra Vamsi and Saravanan, Muthupandian (2024). Combating “diseases,” employing different forms of carbonaceous nanomaterials via “theranostic” applications in clinical and biomedical sectors. Carbon-Based Nanomaterials in Biosystems: Biophysical Interface at Lower Dimensions. (pp. 395-413) London, United Kingdom: Academic Press. doi: 10.1016/B978-0-443-15508-6.00012-9
Journal Articles
Ardila, Carlos Martin, Anegundi, Raghavendra Vamsi, Puttu, Ganesh, Ayyachamy, Swarnambiga and Yadalam, Pradeep Kumar (2025). Comparing gradient boosting and neural networks in the prediction of intersecting genes in gingival epithelial immunity. Journal of Indian Society of Periodontology, 29 (6), 618-626. doi: 10.4103/jisp.jisp_369_24
Yadalam, Pradeep Kumar, Anegundi, Raghavendra Vamsi, Natarajan, Prabhu Manickam and Ardila, Carlos M. (2025). Neural networks for predicting and classifying antimicrobial resistance sequences in Porphyromonas gingivalis. International Dental Journal, 75 (5) 100890, 1-10. doi: 10.1016/j.identj.2025.100890
Kumar Yadalam, Pradeep, Anegundi, Raghavendra Vamsi and Ardila, Carlos M. (2025). Leveraging LSGAN for synthetic gingival keratinization genomic data: Insights from drug interaction and gene ontology in an early fusion framework . Gaceta Medica de Caracas, 133 (2), 399-408. doi: 10.47307/GMC.2025.133.2.11
Khandelwal, Ankita, Anegundi, Raghavendra Vamsi, Yadalam, Pradeep Kumar, Shenoy, Santhosh B., Subramanyam, Kodangala and Ardila, Carlos M. (2025). Assessment of the association between coronary artery blockage and periodontal health status in patients undergoing coronary angiography: a cross-sectional study. Medicina Oral Patologia Oral y Cirugia Bucal, 30 (2) 26946, e306-e312. doi: 10.4317/medoral.26946
Arumuganainar, Deepavalli, Anegundi, Raghavendra Vamsi, Ganesh, P. R. and Yadalam, Pradeep Kumar (2025). Graph attention network predicts drug-gene associations of matrix metalloproteinases 9-based host modulation in periodontitis. Journal of Indian Society of Periodontology, 29 (2), 175-181. doi: 10.4103/jisp.jisp_311_24
Yadalam, Pradeep K., Anegundi, Raghavendra V., Ramadoss, Ramya, Shrivastava, Deepti, Srivastava, Kumar C., Franco, Rocco, Minervini, Giuseppe and D’Amico, Cesare (2025). Pro-angiogenic VEGF inhibition by cadaverine and hydrocinnamic acid metabolites: impairment of periodontal regeneration due to periodontal inflammation. Minerva Dental and Oral Science. doi: 10.23736/s2724-6329.24.04929-5
Yadalam, Pradeep Kumar, Ramadoss, Ramya, Anegundi, Raghavendra Vamsi, Arumuganainar, Deepavalli, Brahmbhatt, Nilam, Mathew, Asok and Ardila, Carlos M (2025). Rack1 and Pon1 as predictive hub genes in WNT-based oral cancer: an interactomic approach. Journal of Oral Medicine and Oral Surgery, 31 (2) 12, 1-9. doi: 10.1051/mbcb/2025019
Yadalam, Pradeep Kumar, Anegundi, Raghavendra Vamsi and Ardila, Carlos M (2025). A scoping review of mathematical modeling techniques for gingival keratinization: A framework for periodontal research. Journal of Clinical and Experimental Dentistry, 17 (10), e1267-e1274. doi: 10.4317/jced.62834
Yadalam, Pradeep Kumar, Anegundi, Raghavendra Vamsi and Ardila, Carlos M. (2024). Integrating artificial intelligence into orthodontic education and practice. International Dental Journal, 74 (6), 1463-1463. doi: 10.1016/j.identj.2024.08.011
Yadalam, Pradeep Kumar, Anegundi, Raghavendra Vamsi, Alarcón-Sánchez, Mario Alberto and Heboyan, Artak (2024). Classification and detection of dental images using meta-learning. World Journal of Clinical Cases, 12 (32), 6559-6562. doi: 10.12998/wjcc.v12.i32.6559
Yadalam, Pradeep Kumar and Anegundi, Raghavendra Vamsi (2024). Can large language models predicting antimicrobial resistance genes prevent the spread of the oral resistome?. The Journal of Basic and Clinical Dentistry, 1 (1), 1-3. doi: 10.64471/jbcd.v1i1.11
Yadalam, Pradeep Kumar, Neelakandan, Anila, Arunraj, Rex, Anegundi, Raghavendra Vamsi and Ardila, Carlos M. (2024). Exploring the interplay between Porphyromonas gingivalis KGP gingipain, herpes virus MicroRNA-6, and Icp4 transcript in periodontitis: computational and clinical insights. PLoS ONE, 19 (10) e0312162, e0312162. doi: 10.1371/journal.pone.0312162
Yadalam, Pradeep Kumar, Anegundi, Raghavendra Vamsi and Ardila, Carlos-M. (2024). Evolution oroinformatics: a deep learning perspective in personalised dental care. International Dental Journal, 74 (5), 1174-1175. doi: 10.1016/j.identj.2024.05.009
Yadalam, Pradeep Kumar, Ramadoss, Ramya and Anegundi, Raghavendra Vamsi (2024). HyperAttention and Linformer-Based β-catenin Sequence Prediction For Bone Formation. Cureus, 16 (9) e68849, 1-8. doi: 10.7759/cureus.68849
Yadalam, Pradeep Kumar, Ramya, R., Anegundi, Raghavendra Vamsi and Chatterjee, Shubhangini (2024). Graph Neural Network-Based Drug Gene Interactions of Wnt/β-Catenin Pathway in Bone Formation. Cureus, 16 (9) e68669, 1-9. doi: 10.7759/cureus.68669
Yadalam, Pradeep Kumar, Anegundi, Raghavendra Vamsi, Ramadoss, Ramya, Shrivastava, Deepti, Almufarrij, Raha Ahmed Shamikh and Srivastava, Kumar Chandan (2024). AI-based 3D-QSAR model of FDA-approved repurposed drugs for inhibiting sclerostin. Technology and Health Care, 32 (5), 3007-3019. doi: 10.3233/THC-231358
Harris, Johnisha, Yadalam, Pradeep Kumar, Anegundi, Raghavendra Vamsi and Arumuganainar, Deepavalli (2024). Comparing Graph Sample and Aggregation (SAGE) and Graph Attention Networks in the Prediction of Drug-Gene Associations of Extended-Spectrum Beta-Lactamases in Periodontal Infections and Resistance. Cureus, 16 (8) e68082, 1-8. doi: 10.7759/cureus.68082
Yadalam, Pradeep Kumar, R, Ramya and Anegundi, Raghavendra Vamsi (2024). Gradient Boosting Prediction of Overlapping Genes From Weighted Co-expression and Differential Gene Expression Analysis of Wnt Pathway: An Artificial Intelligence-Based Bioinformatics Study. Cureus, 16 (8) e67207, 1-9. doi: 10.7759/cureus.67207
Yadalam, Pradeep Kumar, Ramadoss, Ramya and Anegundi, Raghavendra Vamsi (2024). Variational Autoencoders for Generative Drug-Gene Interactions in Periodontal Bone Resorption. Cureus, 16 (7) e65886, 1-7. doi: 10.7759/cureus.65886
Yadalam, Pradeep Kumar, Shenoy, Santhosh B., Anegundi, Raghavendra Vamsi, Mosaddad, Seyed Ali and Heboyan, Artak (2024). Advanced machine learning for estimating vascular occlusion percentage in patients with ischemic heart disease and periodontitis. International Journal of Cardiology: Cardiovascular Risk and Prevention, 21 200291, 1-4. doi: 10.1016/j.ijcrp.2024.200291
Yadalam, Pradeep Kumar, Anegundi, Raghavendra Vamsi, Thilagar, Sivasankari, Arumuganainar, Deepavalli, Shrivastava, Deepti and Heboyan, Artak (2024). Deep Learning Based Micro-RNA Analysis of Lipopolysaccharide Exposed Periodontal Ligament Stem Cells Exosomes Reveal Apoptotic and Inflammasome Derived Pathway Activation. Biomedical Engineering and Computational Biology, 15 11795972241277639, 1-3. doi: 10.1177/11795972241277639
Yadalam, Pradeep Kumar, Anegundi, Raghavendra Vamsi, Saravanan, Muthupandian, Meles, Hadush Negash and Heboyan, Artak (2024). Deep learning prediction of inflammatory inducing protein coding mRNA in P. gingivalis released outer membrane vesicles. Biomedical Engineering and Computational Biology, 15 11795972241277081, 15. doi: 10.1177/11795972241277081
Pampani, Priyanka, Shenoy, Santhosh, Anegundi, Raghavendra Vamsi, Shekar, Magesh Kumar, Dharani, Kalaiselvan and Fathima, Lubna (2024). Estimation of salivary sodium, potassium, and calcium levels in periodontal health and disease. Journal of Indian Society of Periodontology, 28 (5), 569-574. doi: 10.4103/jisp.jisp_198_24
Kumar, Vyshiali Sivaram, Kumar, Pradeep R., Yadalam, Pradeep Kumar, Anegundi, Raghavendra Vamsi, Shrivastava, Deepti, Alfurhud, Ahmed Ata, Almaktoom, Ibrahem T., Alftaikhah, Sultan Abdulkareem Ali, Alsharari, Ahmed Hamoud L and Srivastava, Kumar Chandan (2023). Machine learning in the detection of dental cyst, tumor, and abscess lesions. BMC Oral Health, 23 (1) 833, 1-11. doi: 10.1186/s12903-023-03571-1
Yadalam, Pradeep Kumar, Anegundi, Raghavendra Vamsi and Heboyan, Artak (2023). Prediction of druggable allosteric sites of undruggable multidrug resistance efflux pump P. Gingivalis proteins. Biomedical Engineering and Computational Biology, 14 11795972231202394, 14. doi: 10.1177/11795972231202394
Yadalam, Pradeep Kumar, Arumuganainar, Deepavalli, Anegundi, Raghavendra Vamsi, Shrivastava, Deepti, Alftaikhah, Sultan Abdulkareem Ali, Almutairi, Haifa Ali, Alobaida, Muhanad Ali, Alkaberi, Abdullah Ahmed and Srivastava, Kumar Chandan (2023). CRISPR-Cas-based adaptive immunity mediates phage resistance in periodontal red complex pathogens. Microorganisms, 11 (8) 2060, 1-16. doi: 10.3390/microorganisms11082060
Kalaivani, V., Kumar, Y. Pradeep, Rajapandian, K., Parthasarthy, Harinath, Anegundi, Raghavendra Vamsi, shqaidef, Abedalrahman, Atul Kumar, Harshit, Fernandez, Alberto Ibanez, VC, Divya and Rai, B Shivprasad (2023). Association of elevated IL-6 with poor glycemic control in periodontitis patients. F1000Research, 12 595. doi: 10.12688/f1000research.132660.1
Anegundi, Raghavendra Vamsi, Shenoy, Santhosh B., Chandran, Thara and Pampani, Priyanka (2023). Clinical efficacy of subepithelial connective tissue graft and A-PRF in the treatment of gingival recession. Quintessence International, 54 (2), 134-141. doi: 10.3290/j.qi.b3512389
Yadalam, Pradeep Kumar, Anegundi, Raghavendra Vamsi, Munawar, Safa, Ramadoss, Ramya, Rengaraj, Santhiya, Ramesh, Sindhu, Aljeldah, Mohammed, Shammari, Basim R. Al, Alshehri, Ahmad A., Alwashmi, Ameen S. S., Turkistani, Safaa A., Alawfi, Abdulsalam, Alshengeti, Amer, Garout, Mohammed, Sabour, Amal A., Alshiekheid, Maha A., Aljebaly, Fatimah S. and Rabaan, Ali A. (2023). Designing novel multi-epitope vaccine construct against prevotella intermedia-interpain a: an immunoinformatics approach. Medicina (Lithuania), 59 (2) 302, 1-11. doi: 10.3390/medicina59020302
Narendran, Nirosha, Shenoy, Santhosh, Kodangala, Subramanyam, Vamsi, Anegundi Raghavendra and Kamath, Vinayak (2023). Assessment of myocardial strain in hypertensive patients with periodontitis. Dental and Medical Problems, 60 (1), 61-69. doi: 10.17219/dmp/152707
Yadalam, Pradeep Kumar, Anegundi, Raghavendra Vamsi, Ramadoss, Ramya, Saravanan, M., Veeramuthu, AshokKumar and Heboyan, Artak (2023). Indigenous oral and gut phages defeat the deadly NDM-1 superbug. Bioinformatics and Biology Insights, 17, 1-4. doi: 10.1177/11779322231182767
Verghese, Riya, Anegundi, Raghavendra Vamsi, Thomas, Biju, Varma, Sudhir Rama, Shenoy, Santhosh and Ramesh, Amitha (2023). Comparative evaluation of antioxidant levels in the serum of patients with periodontitis and diabetes mellitus after scaling and root planing. Romanian Journal of Diabetes, Nutrition and Metabolic Diseases, 30 (1), 55-63. doi: 10.46389/rjd-2023-1111
Anegundi, Raghavendra Vamsi, Shenoy, Santhosh B., Kaukab, Syeda Faiza and Talwar, Avaneendra (2023). Correction Notice to : Platelet concentrates in periodontics: review of in vitro studies and systematic reviews. Journal of Oral Medicine and Oral Surgery, 29 (1) 10. doi: 10.1051/mbcb/2023008
Yadalam, Pradeep Kumar, Anegundi, Raghavendra Vamsi, Ramadoss, Ramya, Joseph, Betsy and Veeramuthu, AshokKumar (2022). Felodipine repurposed for targeting TRPV1 receptor to relieve oral cancer pain. Oral Oncology, 134 106094, 1-2. doi: 10.1016/j.oraloncology.2022.106094
Shenoy, Santhosh B. and Anegundi, Raghavendra Vamsi (2022). Orphan implants. Journal of Oral Implantology, 48 (4), 347-346. doi: 10.1563/aaid-joi-d-21-00072
Narendran, Nirosha, Anegundi, Raghavendra Vamsi and Shenoy, Santhosh B. (2022). Awareness of the influence of periodontitis on systemic health among medical professionals: a questionnaire study. Journal of Health and Allied Sciences NU, 13 (02), 228-232. doi: 10.1055/s-0042-1751066
Subba, Tarona Azem, Anegundi, Raghavendra Vamsi, Thomas, Biju, Varma, Sudhir Rama, Bhandary, Rahul and Ramesh, Amitha (2022). Furcation Anatomy Revisited: A Two Dimensional Radiographic Evaluation of Healthy Mandibular Molars. Journal of Clinical and Diagnostic Research, ZC38-ZC41. doi: 10.7860/jcdr/2022/51537.15917
Anegundi, Raghavendra Vamsi, Shenoy, Santhosh B., Kaukab, Syeda Faiza and Talwar, Avaneendra (2022). Platelet concentrates in periodontics: review of in vitro studies and systematic reviews. Journal of Oral Medicine and Oral Surgery, 28 (4) 42, 1-7. doi: 10.1051/mbcb/2022025
Yadalam, Pradeep Kumar, Trivedi, Smith Sodhan, Krishnamurthi, Indhu, Anegundi, Raghavendra Vamsi, Mathew, Asok, Shayeb, Maher Al, Narayanan, Jayaraj Kodangattil, Jaber, Mohamed A. and Rajkumar, R. (2022). Machine learning predicts patient tangible outcomes after dental implant surgery. IEEE Access, 10, 131481-131488. doi: 10.1109/ACCESS.2022.3228793
Narendran, Nirosha, Anegundi, Raghavendra Vamsi, Shenoy, Santhosh B. and Chandran, Thara (2022). Autologous platelet-rich fibrin as an adjunct to non-surgical periodontal therapy—A follow up clinical pilot study. Wound Repair and Regeneration, 30 (1), 140-145. doi: 10.1111/wrr.12979
Anegundi, Raghavendra Vamsi, Shenoy, Santhosh B. and Punj, Anahita (2021). Gingival biotype as an indicator for the buccal bone thickness - a systematic review of the literature. Evidence-Based Dentistry. doi: 10.1038/s41432-021-0206-y
Venugopalan, Vineetha, Vamsi, Anegundi Raghavendra, Shenoy, Santhosh, Ashok, Karishma and Thomas, Biju (2021). Guided bone regeneration- a comprehensive review. Journal of Clinical and Diagnostic Research, 1-4. doi: 10.7860/jcdr/2021/47728.14714
Conference Paper
Yadalam, Pradeep Kumar, Anegundi, Raghavendra Vamsi and Ramadoss, Ramya (2023). Abstract 91: Unsupervised machine learning predicts invasive and undruggable long coding Rna Linc00662, Linc01234, and Spanxa1, Rabphilin 3a, Svil antisense Rna 1 like from oral cancer transcriptomics. 11th Annual Symposium on Global Cancer Research, Virtual, 4-6 April 2023. Philadelphia, PA United States: American Association for Cancer Research (AACR. doi: 10.1158/1538-7755.asgcr23-abstract-91